1004-6453
2007 Issue Z1
a scenario on the stepwise evolution of the genetic code
jing-fa xiao jun yu cas key laboratory of genorne sciences and information; beijing institute of genomics; chinese academy of sciences; beijing 100029; china.
jing-fa xiao jun yu cas key laboratory of genorne sciences and information; beijing institute of genomics; chinese academy of sciences; beijing 100029; china.
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u7 snrnas:a computational survey
manja marz~1 axel mosig~(2; 3) b rbel m.r.stadler~3 peter f.stadler~(1; 4; 5; 6; 7*)1 bioinformatics group; department of computer science; university of leipzig; leipzig d-04107; germany; 2 department of combinatorics and geometry; cas/mpg partner institute for computational biology; shanghai institutes for biological sciences; chinese academy of sciences; shanghai 200031; china; 3 max planck institute for mathematics in the sciences; leipzig d-04103; germany; 4 interdisciplinary center for bioinformatics; university of leipzig; leipzig d-04107; germany; 5 fraunhofer institute for cell therapy and immunology; leipzig d-04103; germany; 6 department of theoretical chemistry; university of vienna; vienna a-1090; austria; 7 santa fe institute; santa fe; nm 87501; usa.
manja marz~1 axel mosig~(2; 3) b rbel m.r.stadler~3 peter f.stadler~(1; 4; 5; 6; 7*)1 bioinformatics group; department of computer science; university of leipzig; leipzig d-04107; germany; 2 department of combinatorics and geometry; cas/mpg partner institute for computational biology; shanghai institutes for biological sciences; chinese academy of sciences; shanghai 200031; china; 3 max planck institute for mathematics in the sciences; leipzig d-04103; germany; 4 interdisciplinary center for bioinformatics; university of leipzig; leipzig d-04107; germany; 5 fraunhofer institute for cell therapy and immunology; leipzig d-04103; germany; 6 department of theoretical chemistry; university of vienna; vienna a-1090; austria; 7 santa fe institute; santa fe; nm 87501; usa.
..............page:187-195
mycobacterial pe_pgrs proteins contain calcium-binding motifs with parallel -roll folds
nandita bachhawat~(1*#) balvinder singh~21 g.n.ramachandran knowledge center for genome informatics; institute of genomics and integrative biology; council of scientific and industrial research; delhi 110007; india; 2 institute of microbial technology; chandigarh 160036; india.# current address:department of bioinformatics; dav college; chandigarh 160012; india.
nandita bachhawat~(1*#) balvinder singh~21 g.n.ramachandran knowledge center for genome informatics; institute of genomics and integrative biology; council of scientific and industrial research; delhi 110007; india; 2 institute of microbial technology; chandigarh 160036; india.# current address:department of bioinformatics; dav college; chandigarh 160012; india.
..............page:236-241
model-based comparative prediction of transcription-factor binding motifs in anabolic responses in bone
andy b.chen~1 kazunori hamamura~1 guohua wang~(2.3) weirong xing~4 subburaman mohan~4 hiroki yokota~(1*) yunlong liu~(2*)1 departments of biomedical engineering/anatomy and cell biology.indiana university purdue university indianapolis; indianapolis; in 46202.usa; 2 division of biostatistics; department of medicine; center for computational biology and bioinformaties.indiana university school of medicine.indianapolis.in 46202; usa; 3 school of computer science and technology; harbin institute of technology.harbin 150001; china; 4 musculoskeletal disease center.jp pettis memorial veterans administration medical center.loma linda.ca 92357.usa.
andy b.chen~1 kazunori hamamura~1 guohua wang~(2.3) weirong xing~4 subburaman mohan~4 hiroki yokota~(1*) yunlong liu~(2*)1 departments of biomedical engineering/anatomy and cell biology.indiana university purdue university indianapolis; indianapolis; in 46202.usa; 2 division of biostatistics; department of medicine; center for computational biology and bioinformaties.indiana university school of medicine.indianapolis.in 46202; usa; 3 school of computer science and technology; harbin institute of technology.harbin 150001; china; 4 musculoskeletal disease center.jp pettis memorial veterans administration medical center.loma linda.ca 92357.usa.
..............page:158-165
transcriptome and proteome expressions involved in insulin resistance in muscle and activated t-lymphocytes of patients with type 2 diabetes
frankic b.stentz~* abbas e.kitabchi division of endocrinology; diabetes and metabolism; department of medicine; the university of tennessee health science center; memphis; tn 38163; usa.
frankic b.stentz~* abbas e.kitabchi division of endocrinology; diabetes and metabolism; department of medicine; the university of tennessee health science center; memphis; tn 38163; usa.
..............page:216-235
a modified t-test feature selection method and its application on the hapmap genotype data
nina zhou lipo wang~* school of electrical and electronic engineering; nanyang technological university; singapore.
nina zhou lipo wang~* school of electrical and electronic engineering; nanyang technological university; singapore.
..............page:242-249
prediction of protein-protein interactions using protein signature profiling
mahmood a.mahdavi and yen-han lin~* department of chemical engineering; university of saskatchewan; saskatoon; sk stn 5a9; canada.
mahmood a.mahdavi and yen-han lin~* department of chemical engineering; university of saskatchewan; saskatoon; sk stn 5a9; canada.
..............page:177-186
computational prediction of rice(oryza sativa)mirna targets
sunil archak j.nagaraju~* laboratory of molecular genetics; centre for dna fingerprinting and diagnostics; hyderabad 500076; india.
sunil archak j.nagaraju~* laboratory of molecular genetics; centre for dna fingerprinting and diagnostics; hyderabad 500076; india.
..............page:196-206
oxypred:prediction and classification of oxygen-binding proteins
s.muthukrishnan aarti garg g.p.s.raghava~* institute of microbial technology; sector 39-a; chandigarh 160036; india.
s.muthukrishnan aarti garg g.p.s.raghava~* institute of microbial technology; sector 39-a; chandigarh 160036; india.
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evaluating peptide mass fingerprinting-based protein identification
senthilkumar damodaran~(1*) troy d.wood~2 priyadharsini nagarajan~3 richard a.rabin~11 department of pharmacology and toxicology; school of medicine and biomedical sciences; university at buffalo; buffalo.ny 14214; usa; 2 department of chemistry; university at buffalo; buffalo.ny 14260; usa; 3 department of biochemistry; school of medicine and biomedical sciences; university at buffalo; buffalo; ny 14214; usa.
senthilkumar damodaran~(1*) troy d.wood~2 priyadharsini nagarajan~3 richard a.rabin~11 department of pharmacology and toxicology; school of medicine and biomedical sciences; university at buffalo; buffalo.ny 14214; usa; 2 department of chemistry; university at buffalo; buffalo.ny 14260; usa; 3 department of biochemistry; school of medicine and biomedical sciences; university at buffalo; buffalo; ny 14214; usa.
..............page:152-157
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reconstruction of pathways associated with amino acid metabolism in human mitochondria
purnima guda~1 chittibabu guda~(1*) shankar subramaniam~(2; 3)1 gen~*ny~*sis center for excellence in cancer genomies and department of epidemiology and biostatistics state university of new york at albany; rensselaer; ny 12144-3456.usa; 2 san diego supercomputer center university of california at san diego; la jolla; ca 92093-0505; usa; 3 departments of bioengineering chemistry and biochemistry; university of california at san diego.la jolla.ca 92093.usa.
purnima guda~1 chittibabu guda~(1*) shankar subramaniam~(2; 3)1 gen~*ny~*sis center for excellence in cancer genomies and department of epidemiology and biostatistics state university of new york at albany; rensselaer; ny 12144-3456.usa; 2 san diego supercomputer center university of california at san diego; la jolla; ca 92093-0505; usa; 3 departments of bioengineering chemistry and biochemistry; university of california at san diego.la jolla.ca 92093.usa.
..............page:166-176
construction,characterization,and chromosomal mapping of a fosmid library of the white-cheeked gibbon(nomascus leucogenys)
liping chen~(1; 2) jianping ye~(1; 2) yan liu~(1; 2) jinghuan wang~1 weiting su~1 fengtang yang~(1*#) wenhui nie~(1*)1 key laboratory of cellular and molecular evolution; kunming institute of zoology; chinese academy of sciences; kunming 650223; china; 2 graduate school of chinese academy of sciences; beijing 100039; china.# current address:wellcome trust sanger institute; hinxton; cambridge cb10 1sa; uk.
liping chen~(1; 2) jianping ye~(1; 2) yan liu~(1; 2) jinghuan wang~1 weiting su~1 fengtang yang~(1*#) wenhui nie~(1*)1 key laboratory of cellular and molecular evolution; kunming institute of zoology; chinese academy of sciences; kunming 650223; china; 2 graduate school of chinese academy of sciences; beijing 100039; china.# current address:wellcome trust sanger institute; hinxton; cambridge cb10 1sa; uk.
..............page:207-215
fasma:a service to format and analyze sequences in multiple alignments
susan costantini~(1; 2) giovanni colonna~2 angelo m.facchiano~(1; 2*)1 laboratory of bioinformatics and computational biology; institute of food science; cnr; via roma 52 a/c; 83100 avellino; italy; 2 crisceb; research center of computational and biotechnological sciences; second university of naples; via costantinopoli 16; 80138 naples; italy.
susan costantini~(1; 2) giovanni colonna~2 angelo m.facchiano~(1; 2*)1 laboratory of bioinformatics and computational biology; institute of food science; cnr; via roma 52 a/c; 83100 avellino; italy; 2 crisceb; research center of computational and biotechnological sciences; second university of naples; via costantinopoli 16; 80138 naples; italy.
..............page:253-255
automated snp genotype clustering algorithm to improve data completeness in high-throughput snp genotyping datasets from custom arrays
edward m.smith; jack littrell; michael olivier
edward m.smith; jack littrell; michael olivier
..............page:256-259